Visualize, elucidate, and identify microbes using molecular spectroscopy

ABOUT

The Shigeto group aims to elucidate the structure and behavior of molecules in complex molecular systems and their relationship to the functions using techniques of molecular spectroscopy and information science. We are involved in basic research that leads to the discovery of novel molecular functions and biological phenomena in various systems, such as microbial cells and their communities (biofilms), symbionts between plants and microbes, and organic-inorganic hybrid materials. In particular, we focus on the development of microbial identification methods using machine learning of spectroscopic data and Raman imaging of biological structures. 

Raman spectra obtained by Raman spectroscopy are often called "molecular fingerprints", providing us with a wealth of information about molecules in the microscopic world. By correctly deciphering this information with the help of artificial intelligence and multivariate analysis, we can, for example, identify cells that produce useful substances among many microbial cells and analyze molecular components, both known and unknown, without destroying the sample. Through these studies, we contribute to explore the interdisciplinary areas spanning chemistry, biology, engineering, and information science.

NEWS

2025.04.30

Our group website has been renewed! 

2025.04.10

Our paper on Nanako's work was accepted for publication in Applied and Environmental Microbiology! We demonstrated single-cell pigment analysis of model phototrophic bacteria and phyllosphere microbes using simultaneous detection of resonance Raman and autofluorescence spectra. 

2025.04.01

AY 2025 started with Dr. Erwan Darussalam and 5 undergraduate students joining the lab. Welcome!  

2025.03.22

Our paper on Nodoka's work was published online in Journal of Raman Spectroscopy! We showed that learning single-cell Raman data acquired from at least two distinctly different growth phases significantly increases the accuracy of bacterial species discrimination.  

2024.12.09-13

Shinsuke gave an invited talk at the 12th Singapore International Chemistry Conference

2024.11.18-21

Shinsuke delivered an invited talk at the 17th International Conference on Optics Within Life Sciences (OWLS-17) held in Mumbai, India. 

2024.10.25

Amu won the Best Poster Award at the 18th Annual Meeting of Japan Society for Molecular Science. Congratulations! 

2024.10.01

Our collaborative paper with a French group on Raman detection on large extracellular vesicles (EVs) was published in Analytical and Bioanalytical Chemistry! Yuka Nishigaki contributed to this work by measuring TERS of EVs. 

2024.09.20

Satrio Sahasraya from Indonesia joined our group. Welcome! 

2024.09.18-21

Amu and Rin gave poster presentations at the 18th Annual Meeting of Japan Society for Molecular Science