研究業績

　　　　　　　 　(**は研究代表者、*は研究分担者又は連携研究者、ボールドは領域内共同研究による論文）
　　　　　　　　　　　　　　　　　　　　　　　　　　　　　　　 　　(情報は随時更新中です)


2016
Katsunuma S, Honda H, Shinoda T, Ishimoto Y, Miyata T**, Kiyonari H, Abe T, Nibu K, Takai Y, Togashi H**. Synergistic action of nectins and cadherins generates the mosaic cellular pattern of the olfactory epithelium. J Cell Biol, 212, 561-575 (2016).

Kato K, Dong B, Wada H, Tanaka-Matakatsu M, Yagi Y, and Hayashi S**. Microtubule-dependent balanced cell contraction and luminal-matrix modification accelerate epithelial tube fusion. Nat Commun.7:11141 (2016).

Oishi K, Aramaki, M,and Nakajima K**. Mutually repressive interaction between Brn1/2 and Rorb contributes to establishment of neocortical layer 2/3 and layer 4.Proc. Natl. Acad. Sci. U.S.A., 113, 3371-3376 (2016).


Oishi K, Nakagawa N, Tachikawa K, Sasaki S, Aramaki M, Hirano S, Yamamoto N, Yoshimura Y and Nakajima K**. Identity of neocortical layer 4 neurons is specified through correct positioning into the cortex. eLife,12;5 (2016)



2015
Kuroda S, Takagi S, Nakagaki, T and Ueda, T Allometry in Physarum plasmodium during free locomotion: size versus shape, speed and rhythm. Journal of Experimental Biology, 218, 3729-3738 (2015).


Rieu, J-P, Delano-Ayari, H, Takagi, S, Tanaka, Y and Nakagaki, Y Periodic traction in migrating large amoeba of Physarum Polycephalum. J. R. Soc. Interface, 12, 20150099 (2015).


Ishibashi M, Miyanaga Y, Matsuoka S, Kozuka J, Togashi Y, Kinashi T** and Ueda M.** Integrin LFA-1 regulates cell adhesion via transient clutch formation,” Biochem.
Biophys. Res. Commun., 464: 459-466 (2015).　


Watabe M, Arjunan SNV, Fukushima S, Iwamoto K, Kozuka J, Matsuoka S, Shindo Y, Ueda M.**, Takahashi K. A computational framework for bioimaging simulation,
PLoS One, 10: e0130089 (2015).　


Komatsuzaki A, Ohyanagi T, Tsukasaki Y, Miyanaga Y, Ueda M** and Jin T. Compact Halo-Ligand Conjugated Quantum Dots for Multicolored Single-Molecule Imaging of Overcrowding GPCR Proteins on Cell Membrane.
Small 11: 1396-1401 (2015). 　


Suzuki T, Osumi N, Wakamatsu Y**. Identification of the neural crest-specific enhancer of Seraf gene in avian peripheral nervous system development. Biochem.
Biophys. Res. Commun, 467, 1103-1109 (2015).　


Watanabe M*, Sawada R, Aramaki T, Skerrett IMand Kondo S. The physiological characterization of Connexin41.8 and Connexin39.4, which are involved in the stripe pattern formation of zebrafish
J. Biol. Chem ,291,1053-1063, 2106.


Yama K, Matsumoto Y, Murakami Y, Seno S, Matsuda H, Gotoh K, Motooka D, Nakamura S, Ying BW**, Yomo T* . Functional specialization in regulation and quality control in thermal adaptive evolution.
Genes Cells , doi: 10.1111/gtc.12298. [Epub ahead of print]


Ying BW**, Matsumoto Y, Kitahara K, Suzuki S, Ono N, Furusawa C, Kishimoto T, Yomo T* . Bacterial transcriptome reorganization in thermal adaptive evolution.
BMC Genomics .,16: 802 (2015).


Ying BW**, Honda T, Tsuru S, Seno S, Matsuda H, Kazuta Y, Yomo T*. Evolutionary consequence of a trade-off between growth and maintenance along with ribosomal damages.
PLoS ONE, 10: 0135639 (2015).　


Kishimoto T, Ying BW⁺**, Tsuru S, Iijima L ,Suzuki S, Hashimoto T, Oyake A, Kobayashi H, Someya Y, Narisawa D, Yomo T*. Molecular clock of neutral mutations in a fitness-increasing evolutionary process. (⁺equal contribution)
PLoS Genet., 11: 1005392 (2015). 　


Sugihara K^#, Nishiyama K^#,**, Fukuhara S*, Uemura A*, Arima S, Kobayashi R, Kohn-Luque A, Mochizuki N, Suda T, Ogawa H, Kurihara H*. ^#These authors contributed equally to this work. Autonomy and non-autonomy of angiogenic cell movements revealed by experiment-driven mathematical modeling. Cell Reports, 1;13,1814-1827, 2015..


Ishii K, Kubo K, Endo T, Yoshida K, Benner S, Ito Y, Aizawa H, Aramaki M, Yamanaka A, Tanaka K, Takata N, Tanaka KF, Mimura M, Tohyama C, Kakeyama M and Nakajima K**. Neuronal heterotopias affect the activities of distant brain areas and lead to behavioral deficits.
J. Neurosci., 35:12432-12445 (2015).　


Kanatani S*, Honda T, Aramaki M*, Hayashi K, Kubo K, Ishida M, Tanaka DH*, Kawauchi T, Sekine K, Kusuzawa S, Kawasaki T, Hirata T, Tabata H*, Uhlen P and Nakajima K**. The COUP-TFII/Neuropilin-2 is a molecular switch steering diencephalon-derived GABAergic neurons in the developing mouse brain.
Proc. Natl. Acad. Sci. U.S.A., 112:E4985-4994 (2015). 　


Nagayama K**, Saito S and Matsumoto T. Multiphasic stress relaxation response of freshly isolated and cultured vascular smooth muscle cells measured by quasi-in situ tensile test.
Bio-Medical Materials and Engineering, 25: 299-312 (2015) .　


Nagayama K**, Hamaji Y, Sato Y and Matsumoto T. Mechanical trapping of the nucleus on micropillared surfaces inhibits the proliferation of vascular smooth muscle cells but not cervical cancer HeLa cells.
Journal of Biomechanics, 48:1796-1803 (2015) .　


Hashimoto H, Yuasa S, Tabata H*, Seki T, Tohyama S, Hayashiji N, Hattori F, Kusumoto D, Kunitomi A, Takei M, Kashimura S, Yozu G, Shimojima M, Motoda C, Muraoka N, Nakajima K**, Sakaue-Sawano A, Miyawaki A and Fukuda K. Analysis of cardiomyocyte movement in the developing murine heart .
Biochem. Biophys. Res. Commun., pii: S0006-291X(15)30267-30269 (2015) .　 　


Ajioka I^**1#, Jinnou H^#, Okada K, Sawada M, Saitoh S and Sawamoto K^**1. Enhancement of neuroblast migrationinto the injured cerebral cortex using laminin-containing porous sponge. (¹ co-corresponding author, ^#co-first author)
Tissue Eng Part A, 21, 193-201 (2015) .　


Komuro Y, Galas L, Lebon A, Raoult E, Fahrion JK, Tilot A, Kumada T**, Ohno N, Vaudry D and Komuro H. The role of calcium and cyclic nucleotide signaling in cerebellar granule cell migration under normal and pathological conditions.
Dev Neurobiol., 75: 369-387 (2015) .　


Sugo N**¹, Morimatsu M, Arai Y, Kousoku Y, Ohkuni A, Nomura T, Yanagida T and Yamamoto N¹. Single-Molecule Imaging Reveals Dynamics of CREB Transcription Factor Bound to Its Target Sequence. (¹corresponding author)
Sci. Rep., 5:10662 (2015) .　


Kai M, Ueno N and Kinoshita N**¹. Phosphorylation-dependent ubiquitination of paraxial protocadherin (PAPC) controls gastrulation cell movements. (¹corresponding author)
PLoS ONE 10(1):e0115111 (2015) .　


Nagai H, Sezaki M, Kakiguchi K, Nakaya Y, Lee HC, Ladher R, Sasanami T, Han JY, Yonemura S** and Sheng G¹. 2015 Cellular analysis of cleavage-stage chick embryos reveals hidden conservation in vertebrate early development. (¹corresponding author)
Development, 142: 1279-1286 (2015) .　


Murai H, Tadokoro R**†, Sakai K and Takahashi Y. In ovo gene manipulation of melanocytes and their adjacent keratinocytes during skin pigmentation of chicken embryos. (†equal contribution)
Development Growth and Differentiation, 57:232-241 (2015) .　


Takahashi T, Takase Y, Yoshino T, Saito D, Tadokoro R** and Takahashi Y. Angiogenesis in the Developing Spinal Cord: Blood Vessel Exclusion from Neural Progenitor Region Is Mediated by VEGF and Its Antagonists.
PLoS One, 10:e0116119 (2015) .　


Takatsuru Y**¹, Nabekura J, Ishikawa T, Kohsaka J and Koibuchi N. Early-life stress increases the motility of microglia in adulthood. (¹corresponding author)
J.Physiol.Sci., 65:187-194 (2015) .　


Morita R, Kihira M, Nakatsu Y, Nomoto Y, Ogawa M, Ohashi K, Mizuno K, Tachikawa T, Ishimoto Y, Morishita Y** and Tsuji T**¹. Coordination of cellular dynamics contributes to tooth epithelium deformations. (¹corresponding author)
Nature Cell Biology, in press.　


Shida H, Mende M, Takano-Yamamoto T, Osumi N, Streit A and Wakamatsu Y**. Otic placode cell specification and proliferation are regulated by Notch signaling in avian development.
Dev. Dyn., 244: 839-851 (2015).　


Honda T and Nakajima K**. Proper level of cytosolic Disabled-1, which is regulated by dual nuclear translocation pathways, is important for cortical neuronal migration.
Cereb. Cortex, pii: bhv162. [Epub ahead of print] (2015). 　


Otani T, Oshima K, Kimpara A, Takeda M, Abdu U, Hayashi S**. A transport and retention mechanism for the sustained distal localization of Spn-F–IKKε during Drosophila bristle elongation.
Development, doi:10.1242/dev.121863 (2015).　


Hannezo E, Dong B, Recho P, Joanny J-F, Hayashi S**. Cortical instability drives periodic supracellular actin pattern formation in epithelial tubes.
Proc Natl Acad Sci USA, doi:10.1073/pnas.1504762112 (2015).　


Dong B and Hayashi S**. Shaping of biological tubes by mechanical interaction of cell and extracellular matrix.
Curr Opin Genet Dev., 32:129–134 (2015).　


Kondo T and Hayashi S**. Mechanisms of cell height changes that mediate epithelial invagination.
Development growth & differentiation, 57:313–323 (2015).　


Matsui T**¹, Ishikawa H and Bessho Y. Cell collectivity regulation within migrating cell cluster during Kupffer’s vesicle formation in zebrafish. (¹Corresponding author)
Frontiers in Cell and Developmental Biology, 3: 27 (2015).　


Kim HS and Nishiwaki K**. Control of the basement membrane and cell migration by ADAMTS proteinases: Lessons from C. elegans genetics.
Matrix Biol., 44-46C:64-69 (2015).　


Kuriyama S**, Yoshida M, Yano S, Aiba N, Kohno T, Minamiya Y, Goto A　and Tanaka M. LPP inhibits collective cell migration during lung cancer dissemination.
Oncogene ,doi: 10.1038/onc.2015.155. [Epub ahead of print] (2015). 　


Tabata H*. Diverse subtypes of astrocytes and their development during corticogenesis.
Fron. Neurosci., 9: 114 (2015). 　


Inaguma Y, Ito H, Hara A, Iwamoto I, Matsumoto A, Yamagata T, Tabata H* and Nagata K. Morphological characterization of mammalian Timeless in the mouse brain development.
Neurosci. Res., 92:21-28 (2015).　


Mizuno M, Matsumoto A, Hamada N, Ito H, Miyauchi A, Jimbo EF, Momoi MY, Tabata H*, Yamagata T and Nagata K. Role of an adaptor protein Lin-7B in brain development: possible involvement in autism spectrum disorders.
J. Neurochem., 132:61-69 (2015).　


Morishita Y**, Kuroiwa A and Suzuki T**. Quantitative analysis of tissue deformation dynamics reveals three characteristic growth modes and globally aligned anisotropic tissue deformation during chick limb development.
Development, pii: dev.109728. [Epub ahead of print] (2015). 　


Hayashi K, Kubo K, Kitazawa A and Nakajima K**. Cellular dynamics of neuronal migration in the hippocampus.
Front.Neurosci., 9:135. doi: 10.3389/fnins (2015). 　


Komatsuzaki A, Ohyanagi T, Tsukasaki Y, Miyanaga Y, Ueda M** and Jin T. Compact Halo-Ligand Conjugated Quantum Dots for Multicolored Single-Molecule Imaging of Overcrowding GPCR Proteins on Cell Membrane.
Small. (doi: 10.1002/smll.201402508) (2015).　


Kohno T¹, Honda T¹, Kubo K¹, Nakano Y, Tsuchiya A, Murakami T, Banno H, Nakajima K**^# and Hattori M^#. Importance of Reelin C-terminal region in the development and maintenance of the postnatal cerebral cortex and its regulation by specific proteolysis. ( ¹co-first authors ;^#corresponding authors. These authors contributed equally to this work )
J. Neurosci., 35:4776-4787 (2015).　


Matsuda M, Koga M, Woltjen K, Nishida E & Ebisuya M**. Synthetic lateral inhibition governs cell-type bifurcation with robust ratios.
Nat. Commun., 6:6195, doi:10.1038/ncomms7195 (2015).　


‡Mamada H, ‡Sato T**, Ota M and Sasaki H. Cell competition in mouse NIH3T3 embryonic fibroblasts controlled by Tead activity and Myc. (‡Equal contribution)
J Cell Sci., pii: jcs.163675. [Epub ahead of print] (2015).　


Murakami Y, Matsumoto Y, Tsuru S, Ying BW**, Yomo T*. Global coordination in adaptation to gene rewiring.
Nucleic Acids Res., pii: gku1366. [Epub ahead of print] (2015). 　


Ishizawa Y, Ying BW**, Tsuru S, Yomo T*. Nutrient-dependent growth defects and mutability of mutators in Escherichia coli.
Genes Cells., 20:68-76 (2015). 　


‡Mizuta K, ‡Sakabe M^**1, Ioka T, Hashimoto A, Ioka T, Sakai C, Okumura K, Hattammaru M, Fujita M, Araki M, Somekawa S, Saito and Nakagawa O¹. Impairment of endothelial-mesenchymal transformation during atrioventriucular cushion formation in Tmem100 null embryo. (‡These authors contributed equally; ¹corresponding authors)
Dev. Dyn., 244:31-42 (2015). 　


Takaki Miyata**, Mayumi Okamoto*, Tomoyasu Shinoda* and Ayano Kawaguchi*. Interkinetic nuclear migration generates and opposes ventricular-zone crowding: insight into tissue mechanics.
Front. Cell. Neurosci., 28:473 (2015). 　


Kikuchi T, Shibata Y, Kim H.-S, Kubota Y, Yoshina S, Mitani S and Nishiwaki K**. The BED finger domain protein MIG-39 halts migration of distal tip cells in Caenorhabditis elegans.
Dev. Biol., 397:151-161 (2015).　　




2014
Kunita, I, Kuroda, S, Ooki, K and Nakagaki, T Attempts to retreat from a dead-ended long capillary by backward swimming in Paramecium. Frontiers in Microbiology, 5, 270, 1-8, 2014


Kuroda, S, Kunita,I, Tanaka, Y, Ishiguro, A, Ryo Kobayashi, R and Nakagaki, T Common mechanics of mode switching in locomotion of limbless and legged animals. Journal of Royal Society Interface, 11, 20140205, 2014.


Matsuda T** and Nagai T*¹. Quantitative measurement of intracellular protein dynamics using photobleaching or photoactivation of fluorescent proteins. (¹corresponding authors)
Microscopy, 63: 403-408 (2014). 　


Takemoto K, Matsuda T**, Sakai N, Fu D, Noda M, Uchiyama S, Kotera I, Arai Y, Horiuchi M, Fukui K, Ayabe T, Inagaki F, Suzuki H, Nagai T*¹. SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation. (¹corresponding authors)
Sci Rep., 3: 2629 (2014). 　


Taoka A**, Eguchi Y, Mise S, Oestreicher Z, Uno F and Fukumori Y¹. A magnetosome-associated cytochrome MamP is critical for magnetite crystal growth during the exponential growth phase. (¹corresponding authors)
FEMS Microbiol. Lett., 358:21-29 (2014). 　


Taoka A**†, Kondo J†, Oestreicher Z and Fukumori Y¹ . Characterization of uncultured giant rod-shaped magnetotactic Gammaproteobacteria from a fresh water pond in Kanazawa, Japan. (¹corresponding authors, †equal contribution)
Microbiology , 160:2226-2234 (2014). 　


Qian T, Chen R, Nakamura M, Furukawa T, Kumada T**, Akita T, Kilb W, Luhmann HJ, Nakahara D and Fukuda A*¹. Activity-dependent endogenous taurine release facilitates excitatory neurotransmission in the neocortical marginal zone of neonatal rats. (¹corresponding author)
Front Cell Neurosci., 10; 8:33 (2014). 　


Wang T, Kumada T**, Morishima T, Iwata S, Kaneko T, Yanagawa Y, Yoshida S and Fukuda A*. Accumulation of GABAergic neurons, causing a focal ambient GABA gradient, and downregulation of KCC2 are induced during microgyrus formation in a mouse model of polymicrogyria.
Cereb. Cortex, 24: 1088-1101 (2014). 　


Nakai T, Nagai T, Tanaka M, Itoh N, Asai N, Enomoto A**, Asai M, Yamada S, Saifullah MAB, Sokabe M, Takahashi M* and Yamada K¹. Girdin phosphorylation is crucial for synaptic plasticity and memory: a potential role in the interaction of BDNF/TrkB/Akt signaling with NMDA receptor. (¹corresponding author)
J Neurosci., 34:14995-145008 (2014). 　


Weng L, Enomoto A**¹, Miyoshi H, Takahashi K, Asai N, Morone N, Jiang P, An J, Kato T*, Kuroda K, Watanabe T, Asai M, Ishida-Takagishi M, Murakumo Y, Nakashima H, Kaibuchi K and Takahashi M*¹. Regulation of Cargo-Selective Endocytosis by Dynamin 2 GTPase-Activating Protein Girdin. (¹corresponding author)
EMBO J, 33:2098-2112 (2014). 　


Han YP, Ma CK, Wang SQ, Enomoto A**, Zhao Y, Takahashi M*¹ and Ma J¹. Evaluation of osteopontin as a potential biomarker for central nervous system embryonal tumors. (¹corresponding author)
J Neurooncol, 119:343-351 (2014). 　


Ota H, Hikita T, Sawada M, Nishioka T, Matsumoto M, Komura M, Ohno A, Kamiya Y, Miyamoto T, Asai N, Enomoto A**, Takahashi M*, Kaibuchi K, Sobue K and Sawamoto K¹. Speed control for neuronal migration in the postnatal brain by Gmip-mediated local inactivation of RhoA. (¹corresponding author)
Nat Commun., 5:4532 (2014). 　


Kato T*, Enomoto A**, Watanabe T, Haga H, Ishida S, Kondo Y, Furukawa K, Urano T, Mii S*, Weng L, Ishida-Takagishi M, Asai M, Asai N, Kaibuchi K, Murakumo Y, Takahashi M*¹. TRIM27/MRTF-B-Dependent Integrin β1 Expression Defines Leading Cells in Cancer Cell Collectives. (¹corresponding author)
Cell Rep., 7:1156-1167 (2014). 　


Niimi K, Murakumo Y, Watanabe N, Kato T, Mii S, Enomoto A**, Asai M, Asai N, Yamamoto E, Kajiyama H, Shibata K, Kikkawa F and Takahashi M*¹. Suppression of REV7 enhances cisplatin sensitivity in ovarian clear cell carcinoma cells. (¹corresponding author)
Cancer Sci., 105:545-552 (2014). 　


Miyachi H, Mii S, Enomoto A**, Murakumo Y, Kato T*, Asai N, Komori K and Takahashi M*¹. Role of Girdin in intimal hyperplasia in vein grafts and efficacy of atelocollagen-mediated application of small interfering RNA for vein graft failure. (¹corresponding author)
J Vasc Surg, 60:479-489 (2014). 　


Saito S, Shimizu H, Yisireyili M, Nishijima F, Enomoto A**, Niwa T¹. Indoxyl sulfate-induced activation of (pro)renin receptor is involved in expression of TGF-β1 and α-smooth muscle actin in proximal tubular cells. (¹corresponding author)
Endocrinology, 155:1899-1907 (2014). 　


Yonemura S**¹. Differential sensitivity of epithelial cells to extracellular matrix in polarity establishment. (¹corresponding author)
PLoS One, 9(11):e112922. (2014). 　


Tsukasaki Y, Miyazaki N, Matsumoto A, Nagae S, Yonemura S**, Tanoue T, Iwasaki K and Takeichi M¹. Giant cadherins Fat and Dachsous self-bend to organize properly spaced intercellular junctions. (¹corresponding author)
Proc Natl Acad Sci U S A., 111:16011-16016 (2014). 　


Sai XR, Yonemura S** and Ladher R¹. Junctionally restricted RhoA activity is necessary for apical constriction during phase 2 inner ear placode invagination. (¹corresponding author)
Dev Biol., 394: 206-216 (2014). 　


Assawachananont J, Mandai M, Okamoto S, Yamada C, Eiraku M, Yonemura S**, Sasai Y and Takahashi M¹. Transplantation of embryonic and induced pluripotent stem cell-derived 3D retinal sheets into retinal degenerative mice. (¹corresponding author)
Stem Cell Reports, 2:662-674. (2014). 　


Toya S, Takatsuru Y**¹, Kokubo M, Amano I, Shimokawa N and Koibuchi N. Early-life-stress affects the homeostasis of glutamatergic synapses. (¹corresponding author)
Eur. J. Neurosci., 40:3627-3634 (2014). 　


Ito H, Morishita R, Tabata H* and Nagata K. Roles of Rho small GTPases in the tangentially migrating neurons.
Histol.Histopathol., 29: 871-879 (2014).　


Inaguma Y, Hamada N, Tabata H*, Iwamoto I, Mizuno M, Nishimura YV, Ito H, Morishita R, Suzuki M, Ohno K, Kumagai T and Nagata K. SIL1, a causative cochaperone gene of Marinesco-Sjogren syndrome, plays an essential role in establishing the architecture of the developing cerebral cortex.
EMBO Mol. Med., 6: 414-429 (2014).　


Cai H, Katoh-Kurasawa M, Muramoto T, Santhanam B, Long Y, Li L, Ueda M**, Iglesias PA, Shaulsky G and Devreotes PN. Nucleocytoplasmic shuttling of a GATA transcription factor functions as a development timer.
Science, 343 (6177): 1249531. doi: 10.1126/science.1249531. (2014). 　


Yasui M, Matsuoka S and Ueda M**. PTEN hopping on the cell membrane is regulated via a positively-charged C2 domain.
PLoS Computational Biology. 10: e1003817. doi: 10.1371/journal.pcbi.1003817 (2014).　
(Faculty of 1000 Biologyに選出された．) 　


Fukuda T, Kominami K, Wang S, Togashi H**, Hirata K, Mizoguchi A, Rikitake Y and Takai Y. Aberrant cochlear hair cell attachments caused by Nectin-3 deficiency result in hair bundle abnormalities.
Development., 141:399-409 (2014).　


Yoshida M, Tsuru S, Hirata N, Seno S, Matsuda H, Ying BW**, Yomo T*. Directed evolution of cell size in Escherichia coli.
BMC Evol Biol., 14:257 (2014). 　


Akeno Y, Ying BW**, Tsuru S, Yomo T*. A reduced genome decreases the host carrying capacity for foreign DNA.
Microb Cell Fact., 13:49 (2014).


Sato N**, Katsumata Y, Sato K and Tajima N. Cellular Dynamics Drives the Emergence of Supracellular Structure in the Cyanobacterium, Phormidium sp. KS.
Life, 4:819-836 (2014).　


‡Morioka T, ‡Sakabe M**¹, Ioka T, Iguchi T, Mizuta K, Hattammaru M, Sakai C, Itoh M, Sato GE, Hashimoto A, Fujita M, Okumura K, Araki M, Xin M, Pederson RA, Utset MF, Kimura H and Nakagawa O¹. An important role of endothelial Hairy-related transcription factors in mouse vascular development. (‡These authors contributed equally; ¹corresponding authors)
Genesis, 52:897-906 (2014). 　


Nishikimi A, Ishihara S, Ozawa M, Etoh K, Fukuda M, Kinashi T** and Katagiri K**. Rab13 acts downstream of the kinase Mst1 to deliver the integrin LFA-1 to the cell surface for lymphocyte trafficking.
Sci. Signal., 7: ra72 (2014).　


Hiraiwa T, Nagamatsu A, Akuzawa N, Nishikawa M and Shibata T**. Relevance of intracellular polarity to accuracy of eukaryotic chemotaxis.
Phys. Biol., 11, 056002 doi:10.1088/1478-3975/11/5/056002 (2014).　


Nakajima A, Ishihara S, Imoto D and Sawai S**. Rectified directional sensing in long-range cell migration.
Nature Communications 5, 5367 doi:10.1038/ncomms6367 (2014).　


Dong B, Miao G and Hayashi S**. A fat body-derived apical extracellular matrix enzyme is transported to the tracheal lumen and is required for tube morphogenesis in Drosophila.
Development, 141:4104-4109 (2014).　


Miao G and Hayashi S**. Manipulation of gene expression by infrared laser heat shock and its application to the study of tracheal development in Drosophila.
Dev Dyn., doi: 10.1002/dvdy.24192. [Epub ahead of print] (2014).　


Fujimuro T, Matsui T**, Nitanda Y, Matta T, Sakumura Y, Saito M, Kohno K, Nakahata Y and Bessho Y. Hes7 3’UTR is required for somite segmentation function.
Scientific Reports, 4: 6462 (2014).　


Matsubara Y, Sakai A, Kuroiwa A and Suzuki T**. Efficient embryonic culture method for the Japanese striped snake, Elaphe quadrivirgata, and its early developmental stages.
Dev. Growth Differ., 56(8):573-582 (2014). 　


Huynen L, Suzuki T**, Ogura T, Watanabe Y, Millar CD, Hofreiter M, Smith C, Mirmoeini S and Lambert DM. Reconstruction and in vivo analysis of the extinct tbx5 gene from ancient wingless moa (Aves: Dinornithiformes).
BMC Evol Biol., 75:1471-2148 (2014). 　


Morishita Y** and Suzuki T**. Bayesian inference of whole-organ deformation dynamics from limited space-time point data.
J. Theor. Biol., 357:74-85 (2014).　


Takeuchia M, Matsudab K, Yamaguchib S, Asakawac K, Miyasakad N, Lalc P, Yoshiharad Y, Kogae A, Kawakamic K, Shimizua T and Hibi M**. Establishment of Gal4 transgenic zebrafish lines for analysis of development of cerebellar neural circuitry.　
Dev Biol., pii: S0012-1606(14)00499-0. doi: 10.1016/j.ydbio [Epub ahead of print] (2014).


Nagao Y, Suzuki T, Shimizu A, Kimura T, Seki R, Adachi T, Inoue C, Omae Y, Hara I, Taniguchi Y, Naruse K, Wakamatsu Y, Kelsh RN, Hibi M** and Hashimoto H. Sox5 functions as a fate switch in medaka pigement cell development.
PLoS Genet., 10(4):e1004246 (2014). 　


Hirota Y, Kubo K, Katayama K, Honda T, Fujino T, Yamamoto TT and Nakajima K**. Reelin receptors ApoER₂ and VLDLR are expressed in distinct spatio-temporal patterns in developing mouse cerebral cortex.
J. Comp. Neurol., doi: 10.1002/cne.23691 (2014). 　


Maintenance of cell fates through acetylated histone and the histone variant H2A.z in C. elegans. Shibata Y and Nishiwaki K**.
Worm, 3:e29048. doi: 10.4161/worm.29048. eCollection (2014).　


Arita Y, Nakaoka Y, Matsunaga T, Kidoya H, Yamamizu K, Arima Y,Kataoka-Hashimoto T, Ikeoka K, Yasui T, Masaki T, Yamamoto K, Higuchi K, Park J-S, Shirai M, Nishiyama K**, Yamagishi H, Otsu K, Kurihara H *, Minami T, Yamauchi-Takihara K, Koh GY, Mochizuki N, Takakura N, Sakata Y, Yamashita JK and Komuro I. Myocardium-derived angiopoietin-1 is essential for coronary vein formation in the developing heart.
Nat.Commun., 5, 4552, doi: 10.1038/ncomms5552 (2014).　


Nishimura YV, Shikanai M, Hoshino M, Ohshima T, Nabeshima Y, Mizutani K, Nagata K, Nakajima K** and Kawauchi T. Cdk5 and its substrates, Dcx and p27^kip1, regulate cytoplasmic dilation formation and nuclear elongation in migrating neurons.
Development, 141:3540-3550 (2014).　


Wakamatsu Y**, Nomura T, Osumi N and Suzuki K. Comparative gene expression analyses reveal heterochrony for Sox9 expression in the cranial neural crest during marsupial development.
Evol Dev., 16: 197-206 (2014). 　


Hatakeyama J, Wakamatsu Y**, Nagafuchi A, Kageyama R, Shigemoto R and Shimamura K. Cadherin-based adhesions in the apical endfoot are required for active Notch signaling to control neurogenesis in vertebrates.
Development, 141: 1671-1682 (2014). 　


Kuriyama S**, Theveneau E, Benedetto A, Parsons M, Tanaka M, Charras G, Kabla A, Mayor R. In vivo collective cell migration requires an LPAR2-dependent increase in tissue fluidity.
J Cell Biol., 206:113-127 (2014).　


Satoyoshi R, Kuriyama S**, Aiba N, Yashiro M, Tanaka M. Asporin activates coordinated invasion of scirrhous gastric cancer and cancer-associated fibroblasts.
Oncogene., doi: 10.1038/onc.2013.584. [Epub ahead of print] (2014).　


Huang T-F, Cho C-Y, Cheng Y-T, Huang J-W, Wu Y-Z, Yeh A. Y-C, Nishiwaki K**, Chang S-C and Wu Y-C. BLMP-1/Blimp-1 Regulates the Spatiotemporal Cell Migration Pattern in C. elegans.
PLoS Genetics, 10(6): e1004428 (2014).　


Nishita M**^#, Qiao S, Miyamoto M, Okinaka Y, Yamada M, Hashimoto R, Iijima K, Otani H, Hartmann C, Nishinakamura R**, Minami Y^#. Role of Wnt5a-Ror2 signaling in morphogenesis of the metanephric mesenchyme during ureteric budding. (^#co-corresponding authors)　
Mol. Cell. Biol., pii: MCB.00491-14. [Epub ahead of print] (2014).　


Doi R, Endo M, Yamakoshi K, Yamanashi Y, Nishita M**, Fukada SI, Minami Y. Critical role of Frizzled1 in age-related alterations of Wnt/beta-catenin signal in myogenic cells during differentiation.
Genes Cells,19:287-296 (2014).　


Sekine K, Kubo K, and Nakajima K^**. How does Reelin control neuronal migration and layer formation in the developing mammalian neocortex?
Neurosci. Res., pii: S0168-0102(14)00115-1. doi: 10.1016/j.neures.2014.06.004 (2014). 　


Dong B, Hannezo E, Hayashi S^**. Balance between Apical Membrane Growth and Luminal Matrix Resistance Determines Epithelial Tubule Shape.
Cell Reports , pii: S2211-1247(14)00263-0. doi: 10.1016/j.celrep.2014.03.066 (2014). 　


Lacroix B, Bourdages KG, Dorn JF, Ihara S^**, Sherwood DR, Maddox PS, Maddox AS. In Situ Imaging in C. elegans Reveals Developmental Regulation of Microtubule Dynamics.
Developmental cell, 29: 203-216 (2014).　


Okamoto M, Shinoda T, Kawaue T, Nagasaka A and Miyata T**. Ferret-mouse differences in interkinetic nuclear migration and cellular densification in the neocortical ventricular zone.
Neuroscience Research,pii: S0168-0102(14)00065-0. doi: 10.1016/j.neures.2014.03.011. (2014).　


Kawaue T, Sagou K, Kiyonari H, Ota K, Okamoto M, Shinoda T, Kawaguchi A and Miyata T^**. Neurogenin2-d4Venus and Gadd45g-d4Venus transgenic mice: Visualizing mitotic and migratory behaviors of cells committed to the neuronal lineage in the developing mammalian brain.
Development Growth & Differentiation, 56:293-304, 2014 doi: 10.1111/dgd.12131 　


Hashimoto H, Yuasa S, Tabata H*, Tohyama S, Hayashiji N, Hattori F, Muraoka N, Egashira T, Okata S, Yae K, Seki T, Nishiyama T, Nakajima K**, Sakaue-Sawano A, Miyawaki A and Fukuda K. Time-lapse imaging of cell cycle dynamics during development in living cardiomyocyte.
J.Mol. Cell. Cardiol.,pii: S0022-2828(14)00097-2. doi: 10.1016/j.yjmcc.2014.03.020. [Epub ahead of print] (2014).　


Suzuki S, Shuto T, Sato T**, Kaneko M, Takada T, Suico MA, Cyr DM, Suzuki H, Kai H. Inhibition of post-translational N-glycosylation by HRD1 that controls the fate of ABCG5/8 transporter.
Sci Rep., 4:4258 (2014).　


Awasaki T**, Kao CF, Lee YJ, Yang CP, Huang Y, Pfeiffer BD, Luan H, Jing X, Huang YF, He Y, Schroeder MD, Kuzin A, Brody T, Zugates CT, Odenwald WF, Lee T. Making Drosophila lineage-restricted drivers via patterned recombination in neuroblasts.
Nat Neurosci., doi: 10.1038/nn.3654. [Epub ahead of print] (2014). 　


Namba T, Kibe Y, Funahashi Y, Nakamuta S, Takano T, Ueno T, Shimada A, Kozawa S, Okamoto M, Shimoda Y, Oda K, Wada Y, Masuda T, Sakakibara A, Igarashi M, Miyata T**, F-S Catherine, Takeuchi K, Kaibuchi K. Pioneering Axons Regulate Neuronal Polarization in the Developing Cerebral Cortex.
Neuron, 81: 814-829 (2014).　


Akiyama R, Masuda M, Tsuge S, Bessho Y and Matsui T**¹. An anterior limit of FGF/Erk signal activity marks the earliest future somite boundary in zebrafish. (¹Corresponding author)
Development, 141: 1104-1109 (2014).　


Inoue S, Kondo S, Parichy DM^# and Watanabe M^**#. Tetraspanin 3c requirement for pigment cell interactions and boundary formation in zebrafish adult pigment stripes. (#co-corresponding authors)　
Pigment Cell Melanoma Res, 27:190-200 (2014). 　


Hamada H, Watanabe M^**#, Lau HE, Nishida T, Hasegawa T, Parichy DM and Kondo S^#. Involvement of Delta/Notch signaling in zebrafish adult pigment stripe patterning. (^#co-corresponding authors)　
Development, 141:318-324 (2014).　


Nishikawa M, Horning M, Ueda M and Shibata T**. Excitable Signal Transduction Induces Both Spontaneous and Directional Cell Asymmetries in the Phosphatidylinositol Lipid Signaling System for Eukaryotic Chemotaxis.
Biophysj., 106: 723-734 (2014). 　


Koga M, Matsuda M, Kawamura T, Sogo T, Shigeno A, Nishida E and Ebisuya M**. Foxd1 is a mediator and indicator of the cell reprogramming process.
Nat. Commun., 5: 3197, doi:10.1038/ncomms4197 (2014). 　


Suzuki M, Toyoda N, Takagi S*. Pulsed Irradiation Improves Target Selectivity of Infrared Laser-Evoked Gene Operator for Single-Cell Gene Induction in the Nematode C. elegans.
PLoS ONE , 9(1): e85783. doi:10.1371/journal.pone.0085783 (2014). 　


Nagayama K**, Yamazaki S, Yahiro Y and Matsumoto T*. Estimation of the mechanical connection between apical stress fibers and the nucleus in vascular smooth muscle cells cultured on a substrate.
Journal of Biomechanics, pii: S0021-9290(14)00073-6. doi: 10.1016/j.jbiomech.2014.01.042. (2014).


Shibata Y, Sawa H, and Nishiwaki K**. HTZ-1/H2A.z and MYS-1/MYST HAT act redundantly to maintain cell fates in somatic gonadal cells through repression of ceh-22 in Caenorhabditis elegans.
Development, 141: 209-218 (2014).　


Retnoaji B, Akiyama R, Matta T, Bessho Y and Matsui T**¹. Retinoic acid controls proper head-to-trunk linkage in zebrafish by regulating an anterior-posterior somitogenetic rate difference. (¹Corresponding author)
Development, 141: 158-165 (2014).　


Kitazawa A*, KuboK , Hayashi K*, Matsunaga Y, Ishii K and Nakajima K**. Hippocampal pyramidal neurons switch from a multipolar migration mode to a novel “climbing” migration mode during development.
J. Neurosci., 34: 1115-1126 (2014). 　


Kim H-S, Kitano Y, Mori M, Takano T, Harbaugh TE, Mizutani K, Yanagimoto H, Miwa S, Ihara S**, Kubota Y, Shibata Y, Ikenishi K, Garriga G and Nishiwaki K**. The novel secreted factor MIG-18 acts with MIG-17/ADAMTS to control cell migration in Caenorhabditis elegans.
Genetics, 196: 471-479 (2014).　




2013
Ma, Q, Johansson, A, Tero, A, Nakagaki, T and Sumpter, DJT Current reinforced random walks for constructing transport network. The Royal Soc. Interface, 10, 20120864, 2013


Kinoshita R, Nam JM, I to YM, Hatanaka KC, Hashimoto A, Handa H, Otsuka Y, Hashimoto S**, Onodera Y, Hosoda M, Onodera S, Shimizu S, Tanaka S, Shirato H, Tanino M, and Sabe H. Co-overexpression of GEP100 and AMAP1 proteins corr elates with rapid local recurrence after breast conservative therapy.
PLoS One , 8:e76791 (2013). 　


Tsugiyama H, Okimura C, Mizuno T and Iwadate Y**¹. Electroporation of adherent cells with low sample volumes on a microscope stage. (¹corresponding author)
J. Exp. Biol., 216: 3591-3598 (2013).　


Nakamura K, Kodera H, Akita T, Shiina M, Kato M, Hoshino H, Terashima H, Osaka H, Nakamura S, Tohyama J, Kumada T**, Furukawa T*, Iwata S, Shiihara T, Kubota M, Miyatake S, Koshimizu E, Nishiyama K, Nakashima M, Tsurusaki Y, Miyake N, Hayasaka K, Ogata K, Fukuda A*, Matsumoto N and Saitsu H. De Novo Mutations in GNAO1, Encoding a Gαo Subunit of Heterotrimeric G Proteins, Cause Epileptic Encephalopathy.
Am. J. Hum. Genet., 93:496-505 (2013).　


Wei B, Kumada T**, Furukawa T, Inoue K*, Watanabe M, Sato K and Fukuda A*. Pre- and post-synaptic switches of GABA actions associated with Cl- homeostatic changes are induced in the spinal nucleus of the trigeminal nerve in a rat model of trigeminal neuropathic pain.
Neuroscience, 228: 334-348 (2013).　


Ota H, Hikita T, Nishioka T, Matsumoto M, Ito J, Asai N, Enomoto A**, Takahashi M*, Kaibuchi K, Sobue K and Sawamoto K¹. Proteomic analysis of Girdin-interacting proteins in migrating new neurons in the postnatal mouse brain. (¹corresponding author)
Biochem Biophys Res Commun, 442:16-21 (2013).　


An J, Enomoto A**, Weng L, Kato T*, Iwakoshi A, Ushida K, Maeda K, Ishida-Takagishi M, Ishii G,Ming S, Sun T and Takahashi M^*1. Significance of cancer-associated fibroblasts in the regulation of gene expression in the leading cells of invasive lung cancer. (¹corresponding author)
J Cancer Res Clin Oncol, 139:379-388 (2013). 　


Ito T, Komeima K, Yasuma T, Enomoto A**, Asai N, Asai M, Iwase S, Takahashi M^*and Terasaki H¹. Girdin and its phosphorylation dynamically regulate neonatal vascular development and pathological neovascularization in the retina. (¹corresponding author)
Am J Pathol, 182:586-596 (2013). 　


Watanabe N, Mii S, Asai N, Asai M, Niimi K, Ushida K, Kato T, Enomoto A**, Ishii H, Takahashi M* and Murakumo Y¹. The REV7 subunit of DNA polymerase ζ is essential for primordial germ cell maintenance in the mouse. (¹corresponding author)
J Biol Chem, 288:10459-10471 (2013). 　


Nagai H, Chew SH, Okazaki Y, Funahashi S, Namba T, Kato T*, Enomoto A**, Jiang L, Akatsuka S and Toyokuni S¹. Metamorphosis of mesothelial cells with active horizontal motility in tissue culture. (¹corresponding author)
Sci Rep, 3:1144 (2013). 　


Sato Y**¹ and Lansford R¹. Transgenesis and imaging in birds, and available transgenic reporter lines. (¹corresponding author)
Development, Growth and Differentiation, 55:406-421 (2013). 　


Torigoe M, Yamauchi K, Tamada A**, Matsuda I, Aiba A, Castellani V and Murakami F. Role of neuropilin‐2 in the ipsilateral growth of midbrain dopaminergic axons.
Eur J Neurosci., 37:1573-1583 (2013). 　


Ikenouchi J¹, Hirata M, Yonemura S** and Umeda M. Sphingomyelin clustering is essential for the formation of microvilli. (¹corresponding author)
J Cell Sci., 126:3585-3592. (2013). 　


Ebrahim S, Fujita T, Millis BA, Kozin E, Ma X, Kawamoto S, Baird MA, Davidson M, Yonemura S**, Hisa Y, Conti MA, Adelstein RS, Sakaguchi H¹ and Kachar B¹. NMII Forms a Contractile Transcellular Sarcomeric Network to Regulate Apical Cell Junctions and Tissue Geometry. (¹corresponding author)
Curr Biol., 23:731-736. (2013). 　


Takeishi A, Kuranaga E, Tonoki A, Misaki K, Yonemura S**, Kanuka H and Miura M¹. Homeostatic Epithelial Renewal in the Gut Is Required for Dampening a Fatal Systemic Wound Response in Drosophila. (¹corresponding author)
Cell Rep., 3:919-930 (2013). 　


Takase Y, Tadokoro R** and Takahashi Y. Low cost labeling with highlighter ink efficiently visualizes developing blood vessels in avian and mouse embryos.
Development Growth and Differentiation, 55:792-801 (2013). 　


Atsuta Y, Tadokoro R**, Saito D and Takahashi Y. Transgenesis of the Wolffian duct visualizes dynamic behavior of cells undergoing tubulogenesis in vivo.
Dev. Growth Differ., 55:579-590 (2013). 　


Hamada N, Ito H, Iwamoto I, Mizuno M, Morishita R, Inaguma Y, Kawamoto S, Tabata H* and Nagata K. Biochemical and morphological characterization of A2BP1 in neuronal tissue.
J. Neurosci. Res., 91:1303-1311 (2013). 　


Suzuki M, Toyoda N, Shimojou M, Takagi S*. Infrared laser-induced gene expression in targeted single cells of Caenorhabditis elegans.
Dev Growth Differ., 55:454-461 (2013).　


Takagi C, Sakamaki K, Morita H, Hara Y, Suzuki M**, Kinoshita N and Ueno N*. Transgenic Xenopus laevis for live imaging in cell and developmental biology.
Dev. Growth Differ., 55: 422-433 (2013). 　


Nagayama K**, Yahiro Y and Matsumoto T*. Apical and basal stress fibers have different roles in mechanical regulation of the nucleus in smooth muscle cells cultured on a substrate.
Cellular and Molecular Bioengineering 6-4: 473-481 (2013) .


Hara Y, Nagayama K**, Yamamoto TS, Matsumoto T*, Suzuki M** and Ueno N*. Directional migration of leading-edge mesoderm generates physical forces: Implication in Xenopus notochord formation during gastrulation.
Developmental Biology 382: 482-495 (2013) .　


Taguchi A, Kaku Y, Ohmori T, Sharmin S, Ogawa M, Sasaki H and Nishinakamura R**. Redefining the in vivo origin of metanephric nephron progenitors enables generation of complex kidney structures from pluripotent stem cells.
Cell Stem Cell ,14:53-67 (2013).　


Ying BW**, Tsuru S, Seno S, Matsuda H and Yomo T. Gene expression scaled by distance to the genome replication site.
Mol BioSyst., 10:375-379 (2013).　


Ying BW**, Akeno Y and Yomo T. Construction of synthetic gene circuits in the Escherichia coli genome.
Methods Mol Biol., 1073: 157-168 (2013). 　


Matsumoto Y, Murakami Y, Tsuru S, Ying BW** and Yomo T. Growth rate-coordinated trasncriptome reorganization in bacteria.
BMC Genomics, 14:808 (2013). 　


Shibata T**, Nishikawa M, Matsuoka S & Ueda M** . Intracellular Encoding of Spatiotemporal Guidance Cues in a Self-Organizing Signaling System for Chemotaxis in Dictyostelium Cells.
Biophys J., 105: 2199-2209 (2013).　


Hiraiwa T, Baba A & Shibata T** . Theoretical model for cell migration with gradient sensing and shape deformation.
Eur Phys J E Soft Matter, 36: 9846 doi: 10.1140/epje/i2013-13032-1 (2013). 　


Inomata H, Shibata T**, Haraguchi T & Sasai Y. Scaling of Dorsal-Ventral Patterning by Embryo Size-Dependent Degradation of Spemann’s Organizer Signals.
Cell , 153: 1296-13311 (2013). 　


Nitanda Y, Matsui T**, Matta T, Higami A, Kohno K, Nakahata Y and Bessho Y. 3’UTR-dependent regulation of mRNA turnover is critical for differential distribution patterns of cyclic gene mRNAs.
FEBS Journal, doi: 10.1111/febs.12582. [Epub ahead of print] . 　


Tahara N, Bessho Y and Matsui T**¹. Celf1 Is Required for Formation of Endoderm-Derived Organs in Zebrafish. (¹Corresponding author)
Int. J. Mol. Sci., 14: 18009-18023 (2013). 　


Ageta-Ishihara N, Miyata T**, Ohshima O, Watanabe M, Sato Y, Hamamura Y, Higashiyama T, Mazitschek R, Bito H & Kinoshita M. Septins promote dendrite and axon development by negatively regulating microtubule stability viaHDAC6-mediated deacetylation.
Nat Commun., 2013 Oct 11;4:2532. doi: 10.1038/ncomms3532.


Okamoto M*, Namba T, Shinoda T*, Kondo T, Watanabe T, Inoue Y, Takeuchi K, Enomoto Y, Ota K, Oda K, Wada Y, Sagou K, Saito K, Sakakibara A*, Kawaguchi A*, Nakajima K**, Adachi T, Fujimori T, Ueda M**, Hayashi S**, Kaibuchi K & Miyata T**. TAG-1-assisted rogenitor elongation streamlines nuclear migration to optimize subapical crowding.
Nature Neuroscience , Published online 22 September 2013, DOI:10.1038/nn.3525 (2013)　


Fujimoto Y, Tanaka SS, Yamaguchi YL, Kobayashi H, Kuroki S, Tachibana M, Shinomura M, Kanai Y, Morohashi K, Kawakami K and Nishinakamura R**. Homeoproteins Six1 and Six4 Regulate Male Sex Determination and Mouse Gonadal Development.
Developmental Cell, 26: 416-430 (2013). 　


Kim KS, Arima Y, Kitazawa T, Nishiyama K**, Asai R, Uchijima Y, Sato T, Levi G, Kitanaka S, Igarashi T, Kurihara Y and Kurihara H. Endothelin Regulates Neural Crest Deployment and Fate to Form Great Vessels through Dlx5/Dlx6-independent Mechanisms
Mech. Dev., [Epub ahead of print] (2013).　


Doi M, Minematsu H, Kubota Y, Nishiwaki K** and Miyamoto M. The novel Rac effector RIN-1 regulates neuronal cell migration and axon pathfinding in C. elegans.
Development, 140: 3435-3444 (2013). 　


Tabata H*, Tsuyoshi H, Nagata K, Sakakibara Y and Nakajima K**. Screening for candidate genes involved in the production of mouse subventricular zone proliferative cells and an estimation of their changes in evolutionary pressure during primate evolution.
Front. Neuroanat., 2013 Jul 31;7:24. doi: 10.3389/fnana.2013.00024 (2013). 　


Hasegawa A**, Iwamura C, Kitajima M, Hashimoto K, Otsuyama K, Ogino H, Nakayama T* and Shirai M. Crucial role for CD69 in the pathogenesis of dextran sulphate sodium-induced colitis.
PLOS ONE , 8(6):e65494. doi:10.1371/journal.pone.0065494. Epub 2013 Jun 13 (2013). 　


Banjo T, Grajcarek J, Yoshino D, Osada H, Miyasaka KY, Kida YS, Ueki Y, Nagayama K**, Kawakami K, Matsumoto T, Sato M, Ogura T. Haemodynamically dependent valvulogenesis of zebrafish heart is mediated by flow-dependent expression of miR-21.
Nature Communications, 2013 Jun 10;4:1978. doi: 10.1038/ncomms2978 (2013).　


Kushiyama A, Sakoda H, Oue N, Okubo M, Nakatsu Y, Ono H, Fukushima T, Kamata H, Nishimura F, Kikuchi T, Fujishiro M, Nishiyama K**, Aburatani H, Kushiyama S, Iizuka M, Taki N, Encinas J, Sentani K, Ogonuki N, Ogura A, Kawazu S, Yasui W, Higashi Y, Kurihara H, Katagiri H, Asano T. Resistin-Like Molecule β Is Abundantly Expressed in Foam Cells and Is Involved in Atherosclerosis Development.
Arterioscler Thromb Vasc Biol., [Epub ahead of print] (2013). 　


Suzuki T, Kaido M, Takayama R and Sato M**. A temporal mechanism that produces neuronal diversity in the Drosophila visual center.
Developmental Biology , 380: 12-24 (2013). 　


Sato M**, Suzuki T and Nakai T. Waves of differentiation in the fly visual system.
Developmental Biology , 380: 1-11 (2013). 　


Hasegawa E, Kaido M, Takayama R and Sato M**. Brain-specific-homeobox is required for the specification of neuronal types in the Drosophila optic lobe.
Developmental Biology , 377: 90-99 (2013). 　


Miyamoto A, Wake H**, Moorhouse AJ, Nabekura J. Microglia and synapse interactions: fine tuning neural circuits and candidate molecules.
Front Cell Neurosci., 2013 May 15;7:70. doi: 10.3389/fncel.2013.00070. Print 2013.


Wake H**, Moorhouse AJ, Miyamoto A, Nabekura J . Microglia: actively surveying and shaping neuronal circuit structure and function.
Trends Neurosci., 2013 Apr;36(4):209-17. doi: 10.1016/j.tins.2012.11.007. Epub 2012 Dec 20.


Miura T**. Turing and Wolpert Work Together During Limb Development.
Sci. Signal., Vol. 6, Issue 270, p. pe14. 9 April 2013. [DOI: 10.1126/scisignal.2004038]


Oshikawa M, Okada K, Nakajima K** and Ajioka I **. Cortical Excitatory Neurons Become Protected from Cell Division during Neurogenesis in an Rb Family-Dependent Manner.
Development , 140: 2310-2320 (2013)　


Matsuda T**, Horikawa K, Saito K and Nagai T*. Highlighted Ca(2+) imaging with a genetically encoded 'caged' indicator.
Sci Rep., 3: 1398 (2013). 　


Hoi H, Matsuda T** ,Nagai T* and Campbell RE. Highlightable Ca²⁺ indicators for live cell imaging.
J Am Chem Soc., 135: 46-49 (2013). 　


Sakaguchi S, Taoka A** and Fukumori Y. Analysis of magnetotactic behavior by swimming assay.
Biosci. Biotech. and Biochem., 77(5), 940-947 (2013). 　


Hasegawa E, Kaido M, Takayama R and Sato M**. Brain-specific-homeobox is required for the specification of neuronal types in the Drosophila optic lobe.
Developmental Biology , [Epub ahead of print] (2013). 　


Wu J, Liu L, Matsuda T**, Zhao Y, Rebane A, Drobizhev M, Chang Y-F, Araki S, Arai Y, March K, Thomas HE, Sagou K, Miyata T**, Nagai T, Li W-H and Campbell RE. Improved orange and red Ca²⁺ indicators and photophysical considerations for optogenetic applications.
ACS Chem. Neurosci., 4: 963-972 (2013). 　


Taniguchi D^#, Ishihara S^#, Oonuki T, Honda-Kitahara M, Kaneko K and Sawai S**. Phase geometries of two-dimensional excitable waves govern self-organized morphodynamics of amoeboid cells. (^# Equal contribution)
Proc. Natl. Acad. Sci. USA. , 110: 5016-5021 (2013). 　


McQuade KJ, Nakajima A, Ilacqua1 AN, Shimada N and Sawai S**. The green tea catechin epigallocatechin gallate (EGCG) blocks cell motility, chemotaxis and development in Dictyostelium discoideum.
PLOS ONE , 8(3):e59275. doi: 10.1371/journal.pone.0059275. Epub 2013 Mar 14 (2013) .　


Masaki N^#, Fujimoto K^#, Honda-Kitahara M, Hada E and Sawai S**. Robustness of Self-Organizing Chemoattractant Field Arising from Precise Pulse Induction of Its Breakdown Enzyme: A Single-Cell Level Analysis of PDE Expression in Dictyostelium. (^# Equal contribution)
Biophys. J. 104: 1-12 (2013).　


Toriyama M, Kozawa S, Sakumura Y and Inagaki N**. Conversion of a Signal into Forces for Axon Outgrowth through Pak1-mediated Shootin1 Phosphorylation.
Curr. Biol.,23: 529-534 (2013) . 　


Iwadate Y**, Okimura C, Sato K, Nakashima Y, Tsujioka M and Minami K. Myosin II mediated directional migration of Dictyostelium cells in response to cyclic stretching of substratum.
Biophys. J., 104: 748-758 (2013).　


Matsuoka S, Shibata T** and Ueda M**. Asymmetric PTEN distribution regulated by spatial heterogeneity in membrane-binding state transitions.
PLoS Computational Biology, 9, e1002862. (doi:10.1371/journal.pcbi.1002862) (2013).　


Kondo T and Hayashi S**. Mitotic cell rounding accelerates epithelial invagination.
Nature , 494: 125-129 (2013).　


Dong B, Kakihara K, Otani T, Wada H and Hayashi S**. Rab9 and retromer regulates retrograde trafficking of luminal protein required for epithelial tube length control.
Nature Communications, 15;4:1358. doi: 10.1038/ncomms2347 (2013).　


Sato Y**. Dorsal aorta formation: Separate origins, lateral-to-medial migration, and remodeling
Dev. Growth Differ., 55: 113-129 (2013) .　


Sakakibara A*¹, Sato T, Ando R, Noguchi N, Masaoka M and Miyata T.** Dynamics of centrosome translocation and microtubule organization in neocortical neurons during distinct modes of polarization. (¹ corresponding author)
Cereb. Cortex , [Epub ahead of print] 　



2012
Hirata T, Kumada T**, Kawasaki T, Furukawa T, Aiba A, Conquet F, Saga Y and Fukuda A*. Guidepost neurons for the lateral olfactory tract: Expression of metabotropic glutamate receptor 1 and innervation by glutamatergic olfactory bulb axons.
Dev. Neurobiol., 72:1559-1576 (2012).　


Inoue K*, Furukawa T, Kumada T**, Yamada J, Wang T, Inoue R and Fukuda A*. Taurine inhibits the K+-Cl- cotransporter KCC2 to regulate embryonic Cl- homeostasis via the with-no-lysine (WNK) protein kinase signaling pathway.
J. Biol. Chem., 287: 20839-20850 (2012).　


Asai M, Asai N, Murata A, Yokota H, Ohmori K, Mii S, Enomoto A**, Murakumo Y and Takahashi M*¹. Similar phenotypes of Girdin germ-line and conditional knockout mice indicate a crucial role for Girdin in the nestin lineage. (¹ corresponding author)
Biochem Biophys Res Commun., 426:533-538 (2012).　


Mao JZ, Jiang P, Cui SP, Ren YL, Zhao J, Yin XH, Enomoto A**, Liu HJ, Hou L, Takahashi M* and Zhang B¹. Girdin locates in centrosome and midbody and plays an important role in cell division. (¹ corresponding author)
Cancer Sci., 103:1780-1787 (2012).　


Ishida-Takagishi M, Enomoto A**¹, Asai N, Ushida K, Watanabe T, Hashimoto T, Kato T, Weng L, Matsumoto S, Asai M, Murakumo Y, Kaibuchi K, Kikuchi A and Takahashi M*¹. The Dishevelled-associating protein Daple controls the non-canonical Wnt/Rac pathway and cell motility. (¹ corresponding author)
Nat Commun., 3:859 (2012).　


Ohara K, Enomoto A**¹, Kato T*, Hashimoto T, Isotani-Sakakibara M, Asai N, Ishida-Takagishi M, Weng L, Nakayama M, Watanabe T, Kato K, Kaibuchi K, Murakumo Y, Hirooka Y, Goto H and Takahashi M*¹. Involvement of Girdin in the determination of cell polarity during cell migration. (¹ corresponding author)
PLoS One, 7:e36681 (2012).　


Mii S, Murakumo Y, Asai N, Jijiwa M, Hagiwara S, Kato T, Asai M, Enomoto A**, Ushida K, Sobue S, Ichihara M and Takahashi M*¹. Epidermal Hyperplasia and Appendage Abnormalities in Mice Lacking CD109. (¹ corresponding author)
Am J Pathol., 181:1180-1189 (2012).　


Eto K, Ishibashi H, Yoshimura T, Watanabe M**, Miyamoto A, Ikenaka K, Moorhouse A and Nabekura J. Enhanced GABAergic activity in the mouse primary somatosensory cortex is insufficient to alleviate chronic pain behavior with reduced expression of neuronal potassium-chloride cotransporter.
Journal of Neuroscience, 32:16552-16559 (2012).　


Baba A, Hiraiwa T and Shibata T**. Directional sensing of deformed cells under faint gradients.
Physical Review E, 86, 060901(R), DOI:10.1103/PhysRevE.86.060901 (2012).　


Namba T, Nishikawa M and Shibata T**. The Relation of Signal Transduction to The Sensitivity and Dynamic Range of Bacterial Chemotaxis.
Biophysical Journal, 103: 1390-1399 (2012).　


Lee J, Miyanaga Y, Ueda M** and Hohng S. Video-rate confocal microscopy for single-molecule imaging in live cells and super-resolution fluorescence imaging.
Biophys. J., 103: 1691-1697 (2012). 　


Vassilev VS, Mandai M, Yonemura S**, Takeichi M. Loss of N-cadherin from the endothelium causes stromal edema and epithelial dysgenesis in the mouse cornea.
Invest Ophthalmol Vis Sci. 53:7183-93 (2012).　


Inoko A, Matsuyama M, Goto H, Ohmuro-Matsuyama Y, Hayashi Y, Enomoto M, Ibi M, Urano T, Yonemura S**, Kiyono T, Izawa I, Inagaki M. Trichoplein and Aurora A block aberrant primary cilia assembly in proliferating cells.
J Cell Biol. 197:391-405 (2012).　


Yanagihashi Y, Usui T, Izumi Y, Yonemura S**, Sumida M, Tsukita S, Uemura T, Furuse M. Snakeskin. A novel smooth septate junction-associated membrane protein, Snakeskin, is required for intestinal barrier function in Drosophila.
J Cell Sci. 125: 1980-1990 (2012).　


Perez-Martinez F.J, Luque-Rio A, Sakakibara A*, Hattori M, Miyata T** and Luque J. M. Reelin-dependent ApoER2 downregulation uncouples newborn neurons from progenitor cells.
Biology Open , 1:1258-1263 (2012) .　


Arima Y, Miyagawa-Tomita S, Maeda K, Asai R, Seya D, Minoux M, Rijli FM, Nishiyama K**, Kim K-S, Uchijima Y, Ogawa H, Kurihara Y* and Kurihara H*. Preotic neural crest cells contribute to coronary artery smooth muscle involving endothelin signaling.
Nature Communications, 3:1267. doi: 10.1038/ncomms2258 (2012).　


Sekine K, Kawauchi T, Kubo K, Honda T, Herz J, Hattori M, Kinashi T** and Nakajima K**. Reelin controls neuronal positioning by promoting cell-matrix adhesion via inside-out activation of integrin α5β1.
Neuron, 76(2), 353-369 (2012).


Ueda Y*, Katagiri K**, Tomiyama T, Yasuda K, Habiro K*, Katakai T*, Ikehara S, Matsumoto M, Kinashi T**. Mst1 regulates integrin-dependent thymocyte trafficking and antigen-recognition in the thymus.
Nature Communications, 3:1098. doi:10.1038/ncomms2105 (2012).


Watanabe T, Ochiai H, Sakuma T, Horch W.H, Hamaguchi N, Nakamura T**, Bando T, Ohuchi H, Yamamoto T, Noji S and Mito T. Non-transgenic genome modifications in a hemimetabolous insect using zinc-finger and TAL effector nucleases .
Nature Communications, 3:1017. doi:10.1038/ncomms2020 (2012).


Nakazawa H, Sada T, Toriyama M, Tago K, Sugiura T, Fukuda M and Inagaki N**. Rab33a mediates anterograde vesicular transport for membrane exocytosis and axon outgrowth.
Journal of Neuroscience, 32(37), 12712-12725 (2012).


Matsui T**¹, Sasaki A, Akazawa N, Otani H and Bessho Y.　Celf1 regulation of dmrt2a is required for somite symmetry and left-right patterning during zebrafish development (^１Corresponding author)
Development, 139(19), 3553-3560 (2012).　


Shibata T**, Nishikawa M, Matsuoka S and Ueda M**. Modeling the self-organized phosphatidylinositol lipid signaling system in chemotactic cells using quantitative image analysis.
Journal of Cell Science, 125: 5138-5150 (2012).　


Yoshinaga S, Ohkubo T, Sasaki S, Nuriya M, Ogawa Y*, Yasui M, Tabata H* and Nakajima K**. A phosphatidylinositol lipids system, Lamellipodin and Ena/VASP regulate dynamic morphology of multipolar migrating cells in the developing cerebral cortex.
J. Neurosci., 32 (34), 11643-11656 (2012).


Onodera Y, Nam JM, Hashimoto A, Norman JC, Shirato H, Hashimoto S**, Sabe H. Rab5c promotes AMAP1-PRKD2 complex formation to enhance β1 integrin recycling in EGF-induced cancer invasion.
J Cell Biol., 197(7), 983-996 (2012).　


Tsujioka M, Yumura S, Inouye K, Patel H, Ueda M** and Yonemura S**. Talin couples the actomyosin cortex to the plasma membrane during rear retraction and cytokinesis.
Proc. Natl. Acad. USA, 109:12992-12997 (2012).　


Nakano T, Ando S, Takata N, Kawada M, Muguruma K**, Sekiguchi K, Saito K, Yonemura S**, Eiraku M and Sasai Y. Self-formation of optic cups and storable stratified neural retina from human ESCs.
Cell Stem Cell ,, 10(6), 771-785 (2012). 　


Yamashita H†, Taoka A**†, Uchihashi T, Asano T, Ando T, Fukumori Y. Single molecule imaging on living bacterial cell surface by high-speed AFM. (†H.Y. and A.T. contributed equally to this work.)
Journal of Molecular Biology, 422(2), 300-309 (2012). 　


Gonda Y, Andrews WD, Tabata H*, Namba T, Parnavelas JG, Nakajima K**, Kohsaka S, Hanashima C and Uchino S. Robo1 regulates the migration and laminar distribution of upper-layer pyramidal neurons of the cerebral cortex.
Cereb. Cortex, [Epub ahead of print] 　


Suzuki M**, Morita H and Ueno N*. Molecular mechanisms of cell shape changes that contribute to vertebrate neural tube closure.
Dev. Growth Differ., 54(3), 266-276 (2012). 　


Toyoshima K, Asakawa K, Ishibashi N, Toki H, Ogawa M, Hasegawa T, Irue T, Tachikawa T, Sato A, Takeda A and Tsuji T**. Fully functional hair follicle regeneration through the rearrangement of stem cells and their niches.
Nat. Commun., 3:784. doi: 10.1038/ncomms1784 (2012).　


Nishimura SI, Ueda M** and Sasai M. Non-Brownian dynamics and strategy of amoeboid cell locomotion.
Physical Review E, 85, 041909 (2012).　


Muguruma K** and Sasai Y. In vitro recapitulation of neural development using embryonic stem cells: From neurogenesis to histogenesis.
Dev. Growth Differ., 54(3), 349-357 (2012). 　


Xie M-J, Yagi H, Kuroda K, Wang C-C, Komada M, Zhao H, Sakakibara A*, Miyata T**, Nagata k, Iguchi T and Sato M. WAVE2-Abi2 complexcontrols growth cone activity and regulates the multipolar-bipolar transitionas well as the initiation of glia-guided migration.
Cereb.Cortex, [Epub ahead of print] 　


Matsui T¹** and Bessho Y. (¹Corresponding author). Left-right asymmetry in zebrafish.
Cellular and Molecular Life Sciences, [Epub ahead of print] 　


Kusuzawa S, Honda T, Fukata Y, Fukata M, Kanatani S*, Tanaka D.H*, and Nakajima K**. Leucine-rich glioma inactivated１(Lgi1), an epilepsy-related secreted protein, has a nuclear localization signal and localizes both to the cytoplasm and nucleus of the caudal ganglionic eminence neurons.
Eur. J. Neurosci., 36(3), 2284-2292 (2012). 　


Nochi R, Kato T, Kaneko J, Itou Y, Kuribayashi H, Fukuda S, Terazono Y, Matani A, Kanatani S*, Nakajima K**, and Hisatsune T. Involvement of mGluR5-signaling in activity-related proliferation of adult hippocampal neural stem cells.
Eur. J. Neurosci., [Epub ahead of print] 　


Tanaka D.H* and Nakajima K**. GABAergic interneuron migration and the evolution of the neocortex.
Dev. Growth Differ., 54(3), 366-372 (2012).　


Kubota Y, Nagata K, Sugimoto A, and Nishiwaki K**. Tissue Architecture in the Caenorhabditis elegans Gonad Depends on Interactions among Fibulin-1, Type IV Collagen and the ADAMTS Extracellular protease.
Genetics., 190, 1379-1388 (2012).　


Tanaka D.H* and Nakajima K**. Migratory Pathways of GABAergic interneurons when they enter the neocortex.
Eur. J. Neurosci.,35(11), 1655-1660 (2012).　


Kim H-S, Nishiwaki K**. Nuclear positioning in the gonadal distal tip cells of C. elegans.
Worm, 1, 112-115 (2012). 　


Obata Y, Takahashi D, Ebisawa M, Kakiguchi K, Yonemura S**, Jinnohara T, Kanaya T, Fujimura Y, Ohmae M, Hase K, Ohno H. Epithelial cell-intrinsic notch signaling plays an essential role in the maintenance of gut immune homeostasis.
J lmmunol., 188, 2427-2436 (2012).　


Hanawa-Suetsugu K, Kukimoto-Niino M, Mishima-Tsumagari C, Akasaka R, Ohsawa N, Sekine SI, Ito T, Tochio N, Koshiba S, Kigawa T, Terada T, Shirouzu M, Nishikimi A, Uruno T, Katakai T, Kinashi T**, Kohda D, Fukui Y**, Yokoyama S. Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms.
Proc. Natl. Acad. USA., 109, 3305-3310 (2012).　


Tabata H*, Yoshinaga S, and Nakajima K**. Cytoarchitecture of mouse and human subventricular zone in developing cerebral neocortex.
Exp. Brain Res., 216, 161-168 (2012).　　


Yoshiura S**, Ohta N, and Matsuzaki F. Tre1 GPCR signaling orients stem cell divisions in the Drosophila central nervous system.
Dev Cell,　22, 79-91 (2012).　


Katagiri K**, Kinashi T**. Rap1 and integrin inside-out signaling.
Methods Mol Biol., 757, 279-296 (2012).　


Natsume A¹, Kato T, Kinjo S, Enomoto A**, Toda H, Shimato S, Ohka F, Motomura K, Kondo Y, Miyata T, Takahashi M* and Wakabayashi T. Girdin maintains the stemness of glioblastoma stem cells. (¹corresponding author)
Oncogene, 31, 2715-2724 (2012).　




2011
Yang L¹, Matsuda T**, Raviraj V, Ching YW, Braet F, Nagai T*, Soon LL¹. Imaging the dynamics of intracellular protein translocation by photoconversion of phamret-cybr/ROM. (¹corresponding authors)
J Microsc., 242: 250-261 (2011).　


Wang Y, Kaneko N, Asai N, Enomoto A**, Isotani-Sakakibara M, Kato T, Asai M, Murakumo Y, Ota H, Hikita T, Namba T, Kuroda K, Kaibuchi K, Ming GL, Song H, Sawamoto K and Takahashi M*¹. Girdin is an intrinsic regulator of neuroblast chain migration in the rostral migratory stream of the postnatal brain. (¹corresponding author)
J Neurosci., 31:8109-8122 (2011).　


Bower DV, Sato Y** and Lansford R¹. Dynamic lineage analysis of embryonic morphogenesis using transgenic quail and 4D multispectral imaging. (¹corresponding author)
Genesis, 49:619-643 (2011).　


Inada H, Watanabe M**, Uchida T, Ishibashi H, Wake H, Nemoto T, Yanagawa Y, Fukuda A and Nabekura J. GABA regulates the multidirectional tangential migration of GABAergic interneurons in living neonatal mice.
Plos One, 6: e27048 (2011).　


Eto K, Wake H, Watanabe M**, Ishibashi H, Noda M, Yanagawa Y and Nabekura J. Inter-regional contribution of enhanced activity of the primary somatosensory cortex to the anterior cingulated cortex accelerates chronic pain behavior.
Journal of Neuroscience, 31: 7631-7636 (2011).　


Ogino H, Azuma Y, Hosoyama A, Nakazawa A, Matsutani M, Hasegawa A**, Otsuyama K, Matsushita K, Fujita N, and Shirai M. Complete genome sequence of NBRC 3288, a unique cellulose-nonproducing strain of Gluconacetobacter xylinus isolated from vinegar.
J. Bacteriol.,193, 6997-6998 (2011).　


Hayashi K, Kimura H, Yamauchi K, Yamamoto N, Tsuchiya H, Tomita K, Kishimoto H, Hasegawa A**, Bouvet M, and Hoffman R M. Comparion of cancer cell seeding, viability and deformation in the lung, muscle and liver, visualized by subcellular real-time imaging in the live mouse.
Anticancer Res., 31, 3665-3672 (2011).　


Menju T, Hashimoto S**, Hashimoto A, Otsuka Y, Handa H, Ogawa E, Toda Y, Wada H, Date H, Sabe H. Engagement of overexpressed Her2 with GEP100 induces autonomous invasive activities and provides a biomarker for metastases of lung adenocarcinoma.
PLoS One. 6 (9):e25301 (2011).　


Hashimoto A, Hashimoto S**, Ando R, Noda K, Ogawa E, Kotani H, Hirose M, Menju T, Morishige M, Manabe T, Toda Y, Ishida S, Sabe H. GEP100-Arf6-AMAP1-cortactin pathway frequently used in cancer invasion is activated by VEGFR2 to promote angiogenesis.
PLoS One. 6(8):e23359 (2011).　


Suga H, Kadoshima T, Minaguchi M, Ohgushi M, Soen M, Nakano T, TAkata N, Wataya T, Muguruma K**, Miyoshi H, Yonemura S**, Oiso Y, and Sasai Y. Self-formation of functional adenohypophysis in three-dimensional culture.
Nature.　480,57-62 (2011).　


Shibata Y, Uchida M, Takeshita H, Nishiwaki K**, and Sawa H. Multiple functions of PBRM-1/Polybromo- and LET-526/Osa-containing chromatin remodeling complexes in C. elegans development.
Dev Biol.,　361, 349-357 (2011).　


Katagiri K**, Ueda Y, Tomiyama T, Yasuda K, Toda Y, Ikehara S, Nakayama KI, Kinashi T**. Deficiency of Rap1-binding protein RAPL causes lymphoproliferative disorders through mislocalization of p27kip1.
Immunity. 34, 24-38 (2011).　


Nakamuta S, Funahashi Y, Namba T, Arimura N, Picciotto M R, Tokumitsu H, Soderling T R, Sakakibara A*, Miyata T**, Kamiguchi H, and Kaibuchi K. Local Application of Neurotrophins Specifies Axons Through Inositol 1,4,5-Trisphosphate, Calcium, and Ca²⁺/Calmodulin-Dependent Protein kinases.
Science Signal. 4, ra76 (2011). [DOI: 10.1126/scisignal.2002011]　


Noguchi T, Koizumi M, and Hayashi S**. Sustained elongation of sperm tail promoted by local remodeling of giant mitochondria in Drosophila.
Curr Biol., 21, 805-814 (2011).　


Kamino K, Fujimoto K and Sawai S**. Collective oscillations in developing cells: Insights from simple systems.
Develop. Growth Differ. 53, 503-517 (2011).　


Tajiri R, Misaki K, Yonemura S**, and Hayashi S**. Joint morphology in the insect leg: evolutionary history inferred from Notch loss-of-function phenotypes in Drosophila.
Development 138, 4621-4626 (2011).　


Uyeda Q.P.T, Iwadate Y**, Umeki N, Nagasaki A and Yumura S. Stretching actin filaments within cells enhances their affinity for the myosin II motor domain.
PLoS ONE 6(10): e26200 (2011).　


Arima S^$, Nishiyama K^$#**, Ko T, Arima Y, Hakozaki Y, Sugihara K, Koseki H, Uchijima Y, Kurihara Y, and Kurihara H. (^$the authors contributed equally to this work, ^#corresponding author). Angiogenic morphogenesis driven by dynamic and heterogeneous collective endothelial cell movement.
Development 138, 4763-4776 (2011).　


Nukazuka A, Tamaki S, Matsumoto K, Oda Y, Fujisawa H and Takagi S**. A shift of the TOR adaptor from Rictor towards Raptor by semaphorin in C.elegans.
Nature Communications. (2011 Sep 27.) Volume:2, Article number:484 DOI:doi:10.1038/ncomms 1495. 　


Nishikimi M, Oishi K, Tabata H*, Torii K, and Nakajima k**. Segregation and pathfinding of callosal axons through EphA3 signaling.
J. Neurosci., 31, 16251-16260 (2011).　


Yonemura S**. Cadherin-actin interactions at adherens junctions.
Curr Opin Cell Biol., 23, 515-522 (2011). 　

 
Yonemura S**. A mechanism of mechanotransduction at the cell-cell interface: Emergence of α-catenin as the center of a force-balancing mechanism for morphogenesis in multicellular organisms.
Bioessays. 33, 732-736 (2011).　
 

Wada K, Itoga K, Okano T, Yonemura S**, Sasaki H. Hippo pathway regulation by cell morphology and stress fibers.
Development, 138, 3907-3914 (2011).　


Tanaka D.H*, Toriumi K, Kubo K, Nabeshima T, and Nakajima K**. GABAergic precursor transplantation into the prefrontal cortex prevents phencyclidine-induced cognitive deficits.
J. Neurosci., 31, 14116-14125 (2011).　

Takemoto M, Hattori Y, Zhao H, Sato H, Tamada A**, Sasaki S,Nakajima K** and Yamamoto N. Laminar and areal expression of Unc5d and its role in cortical cell survival.
Cereb. Cortex 21 (8), 1925-1934 (2011).　


Sawamoto K, Hirota Y, Alfaro-Cervello C, Soriano-Navarro M, He X, Hayakawa-Yano Y, Yamada M, Hikishima K, Tabata H*, Iwanami A, Nakajima K**, Toyama Y, Itoh T, Alvarez-Buylla A, Garcia-Verdugo JM and Okano, H. Cellular composition and organization of the subventricular zone and rostral migratory stream in the adult and neonatal common marmoset brain.
J. Comp. Neurol. 519 (4), 690-713 (2011).　
(Sawamoto K, Hirota Y, Alfaro-Cervello C and Soriano-Navarro M contributed equally to this work)




2010

Miyata T**, Ono Y, Okamoto M, Masaoka M, Sakakibara A, Kawaguchi A, Hashimoto M and Ogawa M. Migration, early axonogenesis, and Reelin-dependent layer-forming behavior of early/posterior-born Purkinje cells in the developing mouse lateral cerebellum.
Neural Development Vol.5, AN.23 (1 September 2010). 　


Ogawa H, Shionyu M, Sugiura N, Hatano S, Nagai N, Kubota Y, Nishiwaki K**, Sato T, Gotoh M, Narimatsu H, Shimizu K, Kimata K and Watanabe H. Chondroitin sulfate synthase-2/chondroitin polymerizing factor has two variants with distinct function.
J Biol Chem. 285, 34155-34167 (2010). 　


Kubo K, Tomita K, Uto A, Kuroda K, Seshadri S, Cohen J S, Kaibuchi K, Kamiya A and Nakajima K**. Migration defects by DISC1 knockdown in C57BL/6, 129X1/SvJ, and ICR strains via in utero gene transfer and virus-mediated RNAi.
Biochem. Biophys. Res. Commun. 400, 631-637 (2010). 　
(K. Kubo and K. Tomita are co-first authors).


Kubo K, Honda T, Tomita K, Sekine K, Ishii K, Uto A, Kobayashi K, Tabata H* and Nakajima K**. Ectopic Reelin Induces Neuronal Aggregation with a Normal Birthdate-Dependent “Inside-Out” Alignment in the Developing Neocortex.
The Journal of Neuroscience 30, 10953-10966 (2010).　


Arai Y, Shibata T, Matsuoka S, Sato MJ, Yanagida T and Ueda M**. Self-organization of the phosphatidylinositol lipids signaling system for random cell migration.
Proc Natl Acad Sci USA. 107, 12399-12404 (2010).